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Cannot Match Namelist Object Name Umpfreq

Generated Tue, 08 Nov 2016 00:56:30 GMT by s_wx1194 (squid/3.5.20) The system returned: (22) Invalid argument The remote host or network may be down. Please try the request again. Please try the request again. Check This Out

Your cache administrator is webmaster. Your cache administrator is webmaster. Please try the request again. Generated Tue, 08 Nov 2016 00:56:30 GMT by s_wx1194 (squid/3.5.20) ERROR The requested URL could not be retrieved The following error was encountered while trying to retrieve the URL: http://0.0.0.4/ Connection

I have tried to modify the sample file >> given in the amber manual in order to change from an angle restraint >> into a distance restraint, using as reference points Generated Tue, 08 Nov 2016 00:56:30 GMT by s_wx1194 (squid/3.5.20) ERROR The requested URL could not be retrieved The following error was encountered while trying to retrieve the URL: http://0.0.0.10/ Connection The system returned: (22) Invalid argument The remote host or network may be down. I am trying to set up a umbrella sampling simulation in order >> to calculate the free energy associated with the separation of two >> transmembrane alpha helices.

Generated Tue, 08 Nov 2016 00:56:30 GMT by s_wx1194 (squid/3.5.20) ERROR The requested URL could not be retrieved The following error was encountered while trying to retrieve the URL: http://0.0.0.5/ Connection Your cache administrator is webmaster. So I tried to remove the ' ' from the input file. Your cache administrator is webmaster.

Once type the command pmemd.cuda...etc, >> I get the following error on the mdout file. >> >> Warning: Error opening "Old" file from subroutine OPNMRG >> File = 'dist.RST' >> >> Perhaps try > running sander or normal pmemd first? > > Regards, > Brian > > On Mon, Sep 17, 2012 at 4:01 PM, Fabrício Bracht wrote: > >> Hello. L. Re: [AMBER] Error with umbrella sampling This message: [ Message body ] [ More options (top, bottom) ] Related messages: [ Next message ] [ Previous message ] [ In reply

The system returned: (22) Invalid argument The remote host or network may be down. Your cache administrator is webmaster. Now it looks like this: &cntrl imin = 0, irest = 1, ntx = 7, ntb = 2, pres0 = 1.0, ntp = 3, csurften = 3, gamma_ten = 17, ninterface Dodson: "Re: [AMBER] cudaMemcpy GpuBuffer error in pmemd.cuda" Previous message: Fabrício Bracht: "[AMBER] cudaMemcpy GpuBuffer error in pmemd.cuda" In reply to: Brian Radak: "Re: [AMBER] Error with umbrella sampling" Next in

Your cache administrator is webmaster. The system returned: (22) Invalid argument The remote host or network may be down. Generated Tue, 08 Nov 2016 00:56:30 GMT by s_wx1194 (squid/3.5.20) ERROR The requested URL could not be retrieved The following error was encountered while trying to retrieve the URL: http://0.0.0.8/ Connection Please try the request again.

Generated Tue, 08 Nov 2016 00:56:30 GMT by s_wx1194 (squid/3.5.20) ERROR The requested URL could not be retrieved The following error was encountered while trying to retrieve the URL: http://0.0.0.6/ Connection his comment is here Generated Tue, 08 Nov 2016 00:56:30 GMT by s_wx1194 (squid/3.5.20) ERROR The requested URL could not be retrieved The following error was encountered while trying to retrieve the URL: http://0.0.0.7/ Connection Please try the request again. Please try the request again.

Please try the request again. Your cache administrator is webmaster. Please try the request again. http://scriptkeeper.net/cannot-match/cannot-match-namelist-object-name-cutres.html The system returned: (22) Invalid argument The remote host or network may be down.

Fabrício 2012/9/17 Brian Radak : > I'm not an expert with either nmropt or pmemd.cuda, but I believe the > module is newly (differently?) implemented in the CUDA code. The system returned: (22) Invalid argument The remote host or network may be down. Please try the request again.

The system returned: (22) Invalid argument The remote host or network may be down.

If so, how would I prepare such simulation? >> Thank you >> Fabrício >> >> _______________________________________________ >> AMBER mailing list >> AMBER.ambermd.org >> http://lists.ambermd.org/mailman/listinfo/amber >> > > > > -- > Your cache administrator is webmaster. The system returned: (22) Invalid argument The remote host or network may be down. The system returned: (22) Invalid argument The remote host or network may be down.

Generated Tue, 08 Nov 2016 00:56:30 GMT by s_wx1194 (squid/3.5.20) ERROR The requested URL could not be retrieved The following error was encountered while trying to retrieve the URL: http://0.0.0.3/ Connection Generated Tue, 08 Nov 2016 00:56:30 GMT by s_wx1194 (squid/3.5.20) ERROR The requested URL could not be retrieved The following error was encountered while trying to retrieve the URL: http://0.0.0.9/ Connection Your cache administrator is webmaster. http://scriptkeeper.net/cannot-match/cannot-match-namelist-object-name-scee.html